STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101361927H/ACA ribonucleoprotein complex subunit 4. (550 aa)    
Predicted Functional Partners:
LOC101360294
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
  
 0.999
LOC101348269
H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.
   
 0.999
LOC101349433
Protein SHQ1 homolog isoform X1.
   
 0.998
LOC101359378
H/ACA ribonucleoprotein complex subunit 3.
   
 0.997
LOC101340740
Nucleolar protein 56 isoform X1.
   
 
 0.994
LOC101348098
Nucleolar protein 58 isoform X1.
  
 
 0.992
LOC101342181
H/ACA ribonucleoprotein complex non-core subunit NAF1.
   
 
 0.988
LOC101355609
Telomerase Cajal body protein 1.
    
 0.982
LOC101342664
RNA helicase.
  
 
 0.981
LOC101359170
rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1.
   
 
 0.973
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.