STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101340355Ubiquitin carboxyl-terminal hydrolase CYLD isoform X1; Belongs to the peptidase C19 family. (953 aa)    
Predicted Functional Partners:
LOC101345331
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.993
LOC101341436
Receptor-interacting serine/threonine-protein kinase 1.
    
 0.991
LOC101341867
Tumor necrosis factor receptor superfamily member 1A.
    
 0.975
LOC101344779
Inhibitor of nuclear factor kappa-B kinase subunit epsilon.
   
 0.974
LOC101359943
Spermatogenesis-associated protein 2.
     
 0.971
LOC101351010
Sequestosome-1 isoform X1.
    
 0.964
LOC101340796
Probable ATP-dependent RNA helicase DDX58.
    
 0.961
LOC101354911
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.960
LOC101348907
B-cell lymphoma 3 protein.
   
 0.946
LOC101347574
NF-kappa-B essential modulator isoform X1.
    
 0.940
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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