STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101348163DNA dC->dU-editing enzyme APOBEC-3 isoform X1. (385 aa)    
Predicted Functional Partners:
LOC101360743
elongin-B.
   
 
 0.917
LOC101361797
Cullin-5 isoform X1; Belongs to the cullin family.
     
 0.916
LOC101343724
RING-box protein 2 isoform X1.
   
 0.914
LOC101358566
elongin-C; Belongs to the SKP1 family.
     
 0.914
LOC101357118
Cytochrome c oxidase subunit 5A, mitochondrial.
   
 0.886
LOC101345533
Cytochrome c oxidase subunit 7C, mitochondrial.
   
 0.883
LOC101359862
Cytochrome b-c1 complex subunit 7; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain; Belongs to the UQCRB/QCR7 family.
   
 0.831
LOC101340894
Uncharacterized protein C1orf198 homolog.
   
 0.830
LOC101343047
Cytochrome c oxidase subunit 5B, mitochondrial.
   
 0.830
LOC101359231
Cytochrome c1, heme protein, mitochondrial.
   
 0.823
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.