STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101357280Lysosomal-trafficking regulator isoform X1. (3800 aa)    
Predicted Functional Partners:
LOC101340770
Vacuolar protein sorting-associated protein VTA1 homolog isoform X1.
    
 
 0.608
LOC101357781
Polyphosphoinositide phosphatase isoform X1.
   
  
 0.557
LOC101357306
Cullin-7 isoform X2; Belongs to the cullin family.
      
 0.552
LOC101351010
Sequestosome-1 isoform X1.
   
 
 0.537
LOC101356611
Sphingomyelin phosphodiesterase 2.
     
 0.487
LOC101354790
Receptor of activated protein C kinase 1.
    
 0.484
LOC101343064
methylmalonyl-CoA mutase, mitochondrial isoform X1.
      
 0.481
LOC101358887
Syntaxin-11 isoform X1; Belongs to the syntaxin family.
      
 0.475
LOC101351651
Nucleolar and coiled-body phosphoprotein 1.
      
 0.449
LOC101350573
Glutathione peroxidase; Belongs to the glutathione peroxidase family.
   
  
 0.439
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.