LOC101355179 protein (Trichechus manatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101355179

Somatostatin receptor type 3; Belongs to the G-protein coupled receptor 1 family. (427 aa)

Predicted Functional Partners:

LOC101351167

0.972

LOC105756731

0.932

LOC101341952

0.930

LOC101343271

0.930

LOC101346092

0.930

LOC101358165

0.503

LOC101361032

0.501

LOC101356608

0.498

LOC101353553

0.478

LOC101351790

0.477

Your Current Organism:

Trichechus manatus

NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101341952	LOC101343271	A0A2Y9D6E4	A0A2Y9DVT4	Guanine nucleotide-binding protein G(I) subunit alpha-2 isoform X1.	Guanine nucleotide-binding protein G(I) subunit alpha-1.	0.900
LOC101341952	LOC101346092	A0A2Y9D6E4	A0A2Y9E7T2	Guanine nucleotide-binding protein G(I) subunit alpha-2 isoform X1.	Guanine nucleotide-binding protein G(K) subunit alpha.	0.900
LOC101341952	LOC101355179	A0A2Y9D6E4	A0A2Y9QZG0	Guanine nucleotide-binding protein G(I) subunit alpha-2 isoform X1.	Somatostatin receptor type 3; Belongs to the G-protein coupled receptor 1 family.	0.930
LOC101341952	LOC101358165	A0A2Y9D6E4	A0A2Y9DX18	Guanine nucleotide-binding protein G(I) subunit alpha-2 isoform X1.	Smoothened homolog; Belongs to the G-protein coupled receptor Fz/Smo family.	0.568
LOC101343271	LOC101341952	A0A2Y9DVT4	A0A2Y9D6E4	Guanine nucleotide-binding protein G(I) subunit alpha-1.	Guanine nucleotide-binding protein G(I) subunit alpha-2 isoform X1.	0.900
LOC101343271	LOC101346092	A0A2Y9DVT4	A0A2Y9E7T2	Guanine nucleotide-binding protein G(I) subunit alpha-1.	Guanine nucleotide-binding protein G(K) subunit alpha.	0.900
LOC101343271	LOC101355179	A0A2Y9DVT4	A0A2Y9QZG0	Guanine nucleotide-binding protein G(I) subunit alpha-1.	Somatostatin receptor type 3; Belongs to the G-protein coupled receptor 1 family.	0.930
LOC101343271	LOC101358165	A0A2Y9DVT4	A0A2Y9DX18	Guanine nucleotide-binding protein G(I) subunit alpha-1.	Smoothened homolog; Belongs to the G-protein coupled receptor Fz/Smo family.	0.568
LOC101346092	LOC101341952	A0A2Y9E7T2	A0A2Y9D6E4	Guanine nucleotide-binding protein G(K) subunit alpha.	Guanine nucleotide-binding protein G(I) subunit alpha-2 isoform X1.	0.900
LOC101346092	LOC101343271	A0A2Y9E7T2	A0A2Y9DVT4	Guanine nucleotide-binding protein G(K) subunit alpha.	Guanine nucleotide-binding protein G(I) subunit alpha-1.	0.900
LOC101346092	LOC101355179	A0A2Y9E7T2	A0A2Y9QZG0	Guanine nucleotide-binding protein G(K) subunit alpha.	Somatostatin receptor type 3; Belongs to the G-protein coupled receptor 1 family.	0.930
LOC101346092	LOC101358165	A0A2Y9E7T2	A0A2Y9DX18	Guanine nucleotide-binding protein G(K) subunit alpha.	Smoothened homolog; Belongs to the G-protein coupled receptor Fz/Smo family.	0.568
LOC101351167	LOC101355179	A0A2Y9DXK9	A0A2Y9QZG0	Somatostatin.	Somatostatin receptor type 3; Belongs to the G-protein coupled receptor 1 family.	0.972
LOC101351167	LOC101361032	A0A2Y9DXK9	A0A2Y9DYM3	Somatostatin.	Galanin peptides.	0.794
LOC101351167	LOC105756731	A0A2Y9DXK9	A0A2Y9RTA9	Somatostatin.	Cortistatin.	0.973
LOC101351790	LOC101353553	A0A2Y9E062	A0A2Y9DHL0	Bardet-Biedl syndrome 1 protein.	Bardet-Biedl syndrome 4 protein.	0.995
LOC101351790	LOC101355179	A0A2Y9E062	A0A2Y9QZG0	Bardet-Biedl syndrome 1 protein.	Somatostatin receptor type 3; Belongs to the G-protein coupled receptor 1 family.	0.477
LOC101351790	LOC101356608	A0A2Y9E062	A0A2Y9DBM6	Bardet-Biedl syndrome 1 protein.	Bardet-Biedl syndrome 2 protein homolog.	0.994
LOC101351790	LOC101358165	A0A2Y9E062	A0A2Y9DX18	Bardet-Biedl syndrome 1 protein.	Smoothened homolog; Belongs to the G-protein coupled receptor Fz/Smo family.	0.767
LOC101353553	LOC101351790	A0A2Y9DHL0	A0A2Y9E062	Bardet-Biedl syndrome 4 protein.	Bardet-Biedl syndrome 1 protein.	0.995