STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101350386Vacuolar protein sorting-associated protein 53 homolog isoform X1. (594 aa)    
Predicted Functional Partners:
LOC101348224
Vacuolar protein sorting-associated protein 54 isoform X1.
   
 0.971
LOC101343455
Vacuolar protein sorting-associated protein 51 homolog.
    
 0.970
LOC101350432
Vacuolar protein sorting-associated protein 52 homolog isoform X3.
   
 0.958
LOC111820509
Vacuolar protein sorting-associated protein 53 homolog.
 
  
  0.950
LOC101353786
Syndetin isoform X1.
    
 
 0.897
LOC101354285
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
   
 
 0.772
LOC101360580
Conserved oligomeric Golgi complex subunit 3 isoform X1.
   
 
 0.765
LOC101348396
Syntaxin-16 isoform X1; Belongs to the syntaxin family.
    
 0.764
LOC101360017
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
     
 0.755
LOC101356547
Spermatogenesis-associated protein 22.
      
 0.719
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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