STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101360484Digestive organ expansion factor homolog isoform X1. (802 aa)    
Predicted Functional Partners:
LOC101340741
Something about silencing protein 10.
   
 0.997
LOC101340891
Nucleolar protein 6.
   
 0.992
LOC101346159
Nucleolar protein 14.
   
 0.989
LOC101359292
Ribosomal RNA processing protein 36 homolog.
   
 0.987
LOC101349180
U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.
   
 
 0.986
LOC101343508
WD repeat-containing protein 36.
   
 0.983
LOC101358979
Protein RRP5 homolog.
   
 
 0.977
LOC101347450
Probable ATP-dependent RNA helicase DDX49 isoform X1; Belongs to the DEAD box helicase family.
   
 
 0.977
LOC101341137
Neuroguidin.
   
  0.974
LOC101356986
Activator of basal transcription 1.
   
 
 0.970
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.