STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101351973WD repeat-containing protein 78. (808 aa)    
Predicted Functional Partners:
LOC101360333
Dynactin subunit 2 isoform X1.
    
 0.685
LOC101341412
Radial spoke head protein 9 homolog.
   
  
 0.665
LOC101348813
Tctex1 domain-containing protein 1.
    
 0.657
LOC101347786
WD repeat-containing protein 37 isoform X1.
     
 0.649
LOC101340457
Dynein light chain roadblock-type 2 isoform X1.
   
 0.633
LOC101357098
Dynein light chain roadblock; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules.
   
 0.633
LOC101352841
Cytoplasmic dynein 2 light intermediate chain 1.
    
 0.617
LOC101346897
Intraflagellar transport protein 140 homolog.
     
 0.603
LOC101358630
WD repeat-containing protein 63.
      
 0.599
LOC101350157
Cilia- and flagella-associated protein 251.
    
 
 0.599
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.