STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101352121DNA oxidative demethylase ALKBH2 isoform X1. (314 aa)    
Predicted Functional Partners:
LOC101343156
1,4-alpha-glucan-branching enzyme.
  
 
 0.743
LOC101348140
Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.
  
  
 0.729
LOC101341710
Nucleic acid dioxygenase ALKBH1.
      
 0.696
LOC101346735
isoleucine--tRNA ligase, mitochondrial.
     
 0.671
LOC101356120
LOW QUALITY PROTEIN: bifunctional glutamate/proline--tRNA ligase.
     
 0.670
LOC101350626
Probable proline--tRNA ligase, mitochondrial.
      
 0.669
LOC101350225
Pseudouridine-5'-phosphatase.
  
 
 0.661
LOC101349759
Protein-glucosylgalactosylhydroxylysine glucosidase.
  
 
 0.647
LOC101352209
Protein YIPF.
  
 0.644
LOC101346980
Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase isoform X1.
  
 
 0.619
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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