STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101348357lamin-B2; Belongs to the intermediate filament family. (511 aa)    
Predicted Functional Partners:
LOC101345325
Lamin isoform X2; Belongs to the intermediate filament family.
    
0.981
LOC101347761
Caspase-6 isoform X1; Belongs to the peptidase C14A family.
   
 0.954
LOC101349286
Granzyme B; Belongs to the peptidase S1 family.
   
 0.903
LOC101350051
Granzyme-like protein 2; Belongs to the peptidase S1 family.
   
 0.903
LOC105756280
Granzyme B-like.
    
 0.902
LOC101340484
lamin-B1; Belongs to the intermediate filament family.
     
 
0.900
LOC101356569
Barrier-to-autointegration factor.
   
 0.807
LOC101343833
Emerin.
    
 0.782
LOC101342911
SUN domain-containing protein 2 isoform X1.
    
 0.668
LOC101360491
Barrier-to-autointegration factor-like protein.
   
 0.667
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.