STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101346840dnaJ homolog subfamily C member 1 isoform X1. (567 aa)    
Predicted Functional Partners:
LOC101356716
UBX domain-containing protein 7.
   
 
 0.907
LOC101340706
78 kDa glucose-regulated protein; Belongs to the heat shock protein 70 family.
   
 0.879
LOC101343516
COMM domain-containing protein 2 isoform X1.
    
 0.679
LOC101350551
Heat shock 70 kDa protein 12A.
   
 0.651
LOC101341405
Coiled-coil domain-containing protein 22.
    
 0.651
LOC101346773
dnaJ homolog subfamily C member 21 isoform X1.
   
 
0.645
LOC101350039
TATA box-binding protein-associated factor RNA polymerase I subunit B isoform X1.
    
 0.630
LOC101361714
SAGA-associated factor 29 isoform X1.
    
 0.630
LOC101346456
COMM domain-containing protein 6.
    
 0.627
LOC101357467
COMM domain-containing protein 10 isoform X1.
    
 0.618
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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