STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105756661Nucleosome assembly protein 1-like 5; Belongs to the nucleosome assembly protein (NAP) family. (163 aa)    
Predicted Functional Partners:
LOC101357385
Histone H2A; Belongs to the histone H2A family.
   
 
 0.592
LOC101348798
Histone H2A; Belongs to the histone H2A family.
   
 
 0.592
LOC101348417
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 
 0.582
LOC101343170
Importin-9.
   
 
 0.546
LOC101342917
Protein shisa-4.
   
 
 0.545
LOC101353508
Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.
    
 
 0.520
LOC101355236
COMM domain-containing protein 1 isoform X1.
      
 0.463
LOC101357226
Serine/threonine-protein kinase BRSK1.
   
 
 0.442
LOC101355153
Serine/threonine-protein kinase BRSK2.
   
 
 0.442
LOC101354325
(E3-independent) E2 ubiquitin-conjugating enzyme.
    
 
 0.434
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.