STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101344481LOW QUALITY PROTEIN: melanoma antigen preferentially expressed in tumors-like. (615 aa)    
Predicted Functional Partners:
LOC101343731
Fanconi anemia group M protein isoform X1.
   
 0.773
LOC101355837
Centromere protein T.
  
 
 0.571
LOC101351826
Protein lin-52 homolog isoform X1.
    
 0.515
LOC101361994
Beta-defensin 129.
  
     0.485
LOC101358140
Protein lin-9 homolog isoform X1.
    
 0.481
LOC101355712
Protein phosphatase 1 regulatory subunit 15A.
  
     0.461
LOC101348346
Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.
   
 0.458
LOC101360780
Tesmin.
   
 0.445
LOC101342610
Protein lin-54 homolog isoform X1.
   
 0.445
LOC101347189
Histone-binding protein RBBP7 isoform X1.
    
 0.438
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.