STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101349036Phosphatidylcholine translocator ABCB4. (1280 aa)    
Predicted Functional Partners:
LOC101355113
Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.
  
 0.501
LOC101348875
ATP-binding cassette sub-family B member 7, mitochondrial isoform X1.
    
0.439
LOC101349076
Hemopexin.
   
  
 0.433
LOC101340669
RBR-type E3 ubiquitin transferase.
     
 0.424
LOC105755977
Ubiquitin-conjugating enzyme E2 variant 1 isoform X1.
     
 0.424
LOC101347029
Alanine--glyoxylate aminotransferase 2, mitochondrial isoform X1; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
  
 0.419
LOC101351597
acetyl-CoA carboxylase 2.
   
 
 0.411
LOC101350305
acetyl-CoA carboxylase 1 isoform X2.
   
 
 0.411
LOC101357152
TIP41-like protein isoform X1.
   
 0.406
LOC101356451
Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.
   
 0.401
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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