STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101350911AN1-type zinc finger protein 5. (213 aa)    
Predicted Functional Partners:
LOC101348850
Rab GTPase-binding effector protein 1 isoform X1.
   
 0.712
LOC101357747
Rab GTPase-binding effector protein 2.
   
 0.706
LOC101357808
TCDD-inducible poly [ADP-ribose] polymerase isoform X1.
      
 0.553
LOC101351433
Uncharacterized protein C9orf85 homolog isoform X1.
      
 0.551
LOC101361983
ubiquitin-40S ribosomal protein S27a.
    
 0.550
LOC101343305
Ras-related protein Rab-24 isoform X1.
   
 0.497
LOC101361963
ubiquitin-60S ribosomal protein L40.
    
 0.494
LOC111822114
polyubiquitin-C.
    
 0.494
LOC101349422
Ras-related protein Rab-22A.
   
 0.474
LOC101341674
Ras-related protein Rab-20.
   
 0.474
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.