STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101360173Schlafen family member 12 isoform X1. (573 aa)    
Predicted Functional Partners:
LOC101356528
Phosphodiesterase.
    
 
 0.662
LOC105756817
LOW QUALITY PROTEIN: zinc finger protein 471-like.
      
 0.645
LOC101351536
Zinc finger protein 667.
      
 0.589
LOC101355565
Phosphodiesterase.
    
 
 0.558
LOC101350738
LOW QUALITY PROTEIN: cathepsin F; Belongs to the peptidase C1 family.
      
 0.551
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.