LOC101352141 protein (Trichechus manatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101352141

LOW QUALITY PROTEIN: LIM and calponin homology domains-containing protein 1. (1470 aa)

Predicted Functional Partners:

LOC101358534

0.561

LOC101354291

0.465

LOC101360142

0.441

LOC101362049

0.441

LOC101353682

0.441

LOC101346152

0.438

LOC101352488

0.430

LOC101359872

0.428

LOC101341225

0.408

LOC101357476

0.408

Your Current Organism:

Trichechus manatus

NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101341225	LOC101352141	A0A2Y9DKE4	A0A2Y9RST4	Thymocyte nuclear protein 1-like.	LOW QUALITY PROTEIN: LIM and calponin homology domains-containing protein 1.	0.408
LOC101346152	LOC101352141	A0A2Y9RIH5	A0A2Y9RST4	Amyloid-beta A4 precursor protein-binding family B member 3 isoform X1.	LOW QUALITY PROTEIN: LIM and calponin homology domains-containing protein 1.	0.438
LOC101346152	LOC101354291	A0A2Y9RIH5	A0A2Y9RV80	Amyloid-beta A4 precursor protein-binding family B member 3 isoform X1.	Mitochondrial fission factor isoform X1.	0.432
LOC101352141	LOC101341225	A0A2Y9RST4	A0A2Y9DKE4	LOW QUALITY PROTEIN: LIM and calponin homology domains-containing protein 1.	Thymocyte nuclear protein 1-like.	0.408
LOC101352141	LOC101346152	A0A2Y9RST4	A0A2Y9RIH5	LOW QUALITY PROTEIN: LIM and calponin homology domains-containing protein 1.	Amyloid-beta A4 precursor protein-binding family B member 3 isoform X1.	0.438
LOC101352141	LOC101352488	A0A2Y9RST4	A0A2Y9D6T9	LOW QUALITY PROTEIN: LIM and calponin homology domains-containing protein 1.	Pleckstrin homology domain-containing family G member 1 isoform X1.	0.430
LOC101352141	LOC101353682	A0A2Y9RST4	A0A2Y9RJF9	LOW QUALITY PROTEIN: LIM and calponin homology domains-containing protein 1.	Segment polarity protein dishevelled homolog DVL-1 isoform X1.	0.441
LOC101352141	LOC101354291	A0A2Y9RST4	A0A2Y9RV80	LOW QUALITY PROTEIN: LIM and calponin homology domains-containing protein 1.	Mitochondrial fission factor isoform X1.	0.465
LOC101352141	LOC101357476	A0A2Y9RST4	A0A2Y9R8N5	LOW QUALITY PROTEIN: LIM and calponin homology domains-containing protein 1.	Thymocyte nuclear protein 1 isoform X1.	0.408
LOC101352141	LOC101358534	A0A2Y9RST4	A0A2Y9QKD1	LOW QUALITY PROTEIN: LIM and calponin homology domains-containing protein 1.	Zinc finger protein 445.	0.561
LOC101352141	LOC101359872	A0A2Y9RST4	A0A2Y9DBV0	LOW QUALITY PROTEIN: LIM and calponin homology domains-containing protein 1.	Thioredoxin domain-containing protein 12.	0.428
LOC101352141	LOC101360142	A0A2Y9RST4	A0A2Y9DKW7	LOW QUALITY PROTEIN: LIM and calponin homology domains-containing protein 1.	Segment polarity protein dishevelled homolog DVL-2.	0.441
LOC101352141	LOC101362049	A0A2Y9RST4	A0A2Y9DWB2	LOW QUALITY PROTEIN: LIM and calponin homology domains-containing protein 1.	Segment polarity protein dishevelled homolog DVL-3.	0.441
LOC101352488	LOC101352141	A0A2Y9D6T9	A0A2Y9RST4	Pleckstrin homology domain-containing family G member 1 isoform X1.	LOW QUALITY PROTEIN: LIM and calponin homology domains-containing protein 1.	0.430
LOC101353682	LOC101352141	A0A2Y9RJF9	A0A2Y9RST4	Segment polarity protein dishevelled homolog DVL-1 isoform X1.	LOW QUALITY PROTEIN: LIM and calponin homology domains-containing protein 1.	0.441
LOC101353682	LOC101360142	A0A2Y9RJF9	A0A2Y9DKW7	Segment polarity protein dishevelled homolog DVL-1 isoform X1.	Segment polarity protein dishevelled homolog DVL-2.	0.962
LOC101353682	LOC101362049	A0A2Y9RJF9	A0A2Y9DWB2	Segment polarity protein dishevelled homolog DVL-1 isoform X1.	Segment polarity protein dishevelled homolog DVL-3.	0.962
LOC101354291	LOC101346152	A0A2Y9RV80	A0A2Y9RIH5	Mitochondrial fission factor isoform X1.	Amyloid-beta A4 precursor protein-binding family B member 3 isoform X1.	0.432
LOC101354291	LOC101352141	A0A2Y9RV80	A0A2Y9RST4	Mitochondrial fission factor isoform X1.	LOW QUALITY PROTEIN: LIM and calponin homology domains-containing protein 1.	0.465
LOC101357476	LOC101352141	A0A2Y9R8N5	A0A2Y9RST4	Thymocyte nuclear protein 1 isoform X1.	LOW QUALITY PROTEIN: LIM and calponin homology domains-containing protein 1.	0.408