LOC101354213 protein (Trichechus manatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101354213

Myeloid leukemia factor 2. (247 aa)

Predicted Functional Partners:

LOC101347981

0.574

LOC101349326

0.569

LOC101352088

0.568

LOC101347803

0.550

LOC101344466

0.532

LOC101357293

0.492

LOC101350495

0.483

LOC101347085

0.427

Your Current Organism:

Trichechus manatus

NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101344466	LOC101354213	A0A2Y9DL66	A0A2Y9RUE7	C-type lectin domain family 14 member A.	Myeloid leukemia factor 2.	0.532
LOC101347085	LOC101347981	A0A2Y9RB20	A0A2Y9DBD2	Small glutamine-rich tetratricopeptide repeat-containing protein alpha isoform X1.	hemK methyltransferase family member 2.	0.581
LOC101347085	LOC101350495	A0A2Y9RB20	A0A2Y9E335	Small glutamine-rich tetratricopeptide repeat-containing protein alpha isoform X1.	Mediator of RNA polymerase II transcription subunit 15; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.457
LOC101347085	LOC101352088	A0A2Y9RB20	A0A2Y9DC45	Small glutamine-rich tetratricopeptide repeat-containing protein alpha isoform X1.	DNA-directed RNA polymerase II subunit RPB3.	0.477
LOC101347085	LOC101354213	A0A2Y9RB20	A0A2Y9RUE7	Small glutamine-rich tetratricopeptide repeat-containing protein alpha isoform X1.	Myeloid leukemia factor 2.	0.427
LOC101347085	LOC101357293	A0A2Y9RB20	A0A2Y9DLC7	Small glutamine-rich tetratricopeptide repeat-containing protein alpha isoform X1.	BAG family molecular chaperone regulator 5.	0.465
LOC101347803	LOC101354213	A0A2Y9D7E2	A0A2Y9RUE7	N(G),N(G)-dimethylarginine dimethylaminohydrolase 1.	Myeloid leukemia factor 2.	0.550
LOC101347981	LOC101347085	A0A2Y9DBD2	A0A2Y9RB20	hemK methyltransferase family member 2.	Small glutamine-rich tetratricopeptide repeat-containing protein alpha isoform X1.	0.581
LOC101347981	LOC101350495	A0A2Y9DBD2	A0A2Y9E335	hemK methyltransferase family member 2.	Mediator of RNA polymerase II transcription subunit 15; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.512
LOC101347981	LOC101354213	A0A2Y9DBD2	A0A2Y9RUE7	hemK methyltransferase family member 2.	Myeloid leukemia factor 2.	0.574
LOC101347981	LOC101357293	A0A2Y9DBD2	A0A2Y9DLC7	hemK methyltransferase family member 2.	BAG family molecular chaperone regulator 5.	0.546
LOC101349326	LOC101354213	A0A2Y9RRJ2	A0A2Y9RUE7	ADP-ribosylation factor GTPase-activating protein 2 isoform X1.	Myeloid leukemia factor 2.	0.569
LOC101350495	LOC101347085	A0A2Y9E335	A0A2Y9RB20	Mediator of RNA polymerase II transcription subunit 15; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Small glutamine-rich tetratricopeptide repeat-containing protein alpha isoform X1.	0.457
LOC101350495	LOC101347981	A0A2Y9E335	A0A2Y9DBD2	Mediator of RNA polymerase II transcription subunit 15; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	hemK methyltransferase family member 2.	0.512
LOC101350495	LOC101352088	A0A2Y9E335	A0A2Y9DC45	Mediator of RNA polymerase II transcription subunit 15; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	DNA-directed RNA polymerase II subunit RPB3.	0.701
LOC101350495	LOC101354213	A0A2Y9E335	A0A2Y9RUE7	Mediator of RNA polymerase II transcription subunit 15; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Myeloid leukemia factor 2.	0.483
LOC101352088	LOC101347085	A0A2Y9DC45	A0A2Y9RB20	DNA-directed RNA polymerase II subunit RPB3.	Small glutamine-rich tetratricopeptide repeat-containing protein alpha isoform X1.	0.477
LOC101352088	LOC101350495	A0A2Y9DC45	A0A2Y9E335	DNA-directed RNA polymerase II subunit RPB3.	Mediator of RNA polymerase II transcription subunit 15; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.701
LOC101352088	LOC101354213	A0A2Y9DC45	A0A2Y9RUE7	DNA-directed RNA polymerase II subunit RPB3.	Myeloid leukemia factor 2.	0.568
LOC101354213	LOC101344466	A0A2Y9RUE7	A0A2Y9DL66	Myeloid leukemia factor 2.	C-type lectin domain family 14 member A.	0.532