STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101350684mRNA export factor isoform X1. (409 aa)    
Predicted Functional Partners:
LOC101348698
Nuclear pore complex protein Nup98-Nup96 isoform X1.
   
 0.999
LOC101342921
Nuclear pore complex protein Nup214.
    
 0.992
LOC101353303
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
   
 0.980
LOC101354044
ranBP2-like and GRIP domain-containing protein 4 isoform X1.
   
 0.973
LOC101359743
Nuclear pore complex protein Nup153.
    
 0.973
LOC101362056
Nuclear RNA export factor 1 isoform X1.
    
 0.971
LOC101344499
Nuclear pore complex protein Nup155 isoform X1.
    
 0.971
LOC101345001
Nuclear RNA export factor 2-like.
    
 0.971
LOC101342413
Nuclear RNA export factor 3-like.
    
 0.971
LOC101343677
LOW QUALITY PROTEIN: nuclear RNA export factor 2-like.
    
 0.971
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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