pafB protein (Actinomyces slackii) - STRING interaction network

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second shell of interactors

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Known Interactions

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Predicted Interactions

gene neighborhood

gene fusions

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textmining

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protein homology

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Score

pafB

Unannotated protein. (343 aa)

Predicted Functional Partners:

pafC

0.991

rpoZ

0.834

rbpA

0.830

hrdB

0.793

rpoB

0.793

rpoC

0.793

rpoA

0.793

polC_2

0.789

cdaR

0.649

desK_5

0.630

Your Current Organism:

Actinomyces slackii

NCBI taxonomy Id: 1278298
Other names: A. slackii ATCC 49928, Actinomyces slackii ATCC 49928, Actinomyces slackii Sh13/4563

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cdaR	pafB	GCA_000428685_00510	GCA_000428685_00352	Unannotated protein.	Unannotated protein.	0.649
cdaR	pafC	GCA_000428685_00510	GCA_000428685_00351	Unannotated protein.	Unannotated protein.	0.536
cdaR	rbpA	GCA_000428685_00510	GCA_000428685_00344	Unannotated protein.	Unannotated protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.	0.500
desK_5	pafB	GCA_000428685_00354	GCA_000428685_00352	Unannotated protein.	Unannotated protein.	0.630
desK_5	pafC	GCA_000428685_00354	GCA_000428685_00351	Unannotated protein.	Unannotated protein.	0.636
hrdB	pafB	GCA_000428685_00715	GCA_000428685_00352	Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	Unannotated protein.	0.793
hrdB	pafC	GCA_000428685_00715	GCA_000428685_00351	Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	Unannotated protein.	0.793
hrdB	polC_2	GCA_000428685_00715	GCA_000428685_00704	Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	Unannotated protein.	0.704
hrdB	rbpA	GCA_000428685_00715	GCA_000428685_00344	Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	Unannotated protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.	0.999
hrdB	rpoA	GCA_000428685_00715	GCA_000428685_01432	Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
hrdB	rpoB	GCA_000428685_00715	GCA_000428685_01394	Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
hrdB	rpoC	GCA_000428685_00715	GCA_000428685_01395	Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
hrdB	rpoZ	GCA_000428685_00715	GCA_000428685_00394	Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	Unannotated protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.999
pafB	cdaR	GCA_000428685_00352	GCA_000428685_00510	Unannotated protein.	Unannotated protein.	0.649
pafB	desK_5	GCA_000428685_00352	GCA_000428685_00354	Unannotated protein.	Unannotated protein.	0.630
pafB	hrdB	GCA_000428685_00352	GCA_000428685_00715	Unannotated protein.	Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.793
pafB	pafC	GCA_000428685_00352	GCA_000428685_00351	Unannotated protein.	Unannotated protein.	0.991
pafB	polC_2	GCA_000428685_00352	GCA_000428685_00704	Unannotated protein.	Unannotated protein.	0.789
pafB	rbpA	GCA_000428685_00352	GCA_000428685_00344	Unannotated protein.	Unannotated protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.	0.830
pafB	rpoA	GCA_000428685_00352	GCA_000428685_01432	Unannotated protein.	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.793