STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OHT45922.1TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (993 aa)    
Predicted Functional Partners:
OHT43925.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.574
OHT43597.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.545
OHT46145.1
Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.499
OHT46221.1
Peptidase M56, BlaR1; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.499
OHT46943.1
Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.499
OHT45671.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
  0.499
OHT45243.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
  0.499
OHT44531.1
Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.499
OHT44758.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.499
OHT44058.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.499
Your Current Organism:
Flavobacterium spartansii
NCBI taxonomy Id: 1278819
Other names: ATCC BAA-2541, F. spartansii, Flavobacterium sp. T16F.07.C.CHS.SRW.W.Kidney.D, Flavobacterium spartansii Loch and Faisal 2014, LMG 27337, LMG:27337, strain T16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.