STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phoKAlkaline phosphatase precursor. (552 aa)    
Predicted Functional Partners:
boxD
3,4-dehydroadipyl-CoA semialdehyde dehydrogenase.
    
  0.678
ugpQ
Glycerophosphoryl diester phosphodiesterase.
  
 
 0.591
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
   
   0.561
EMR03354.1
Maltodextrin phosphorylase.
     
 0.555
EMR03965.1
Protein of unknown function (DUF2652).
     
 0.549
upp
Uracil phosphoribosyltransferase.
  
  
  0.547
EMR04208.1
Iron-sulfur cluster repair di-iron protein; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family.
  
    0.534
yrrK
Putative Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
       0.531
ndk
Nucleoside diphosphate kinase; Belongs to the NDK family.
     
 0.530
apaH
Bis(5'-nucleosyl)-tetraphosphatase, symmetrical.
   
  0.526
Your Current Organism:
Cesiribacter andamanensis
NCBI taxonomy Id: 1279009
Other names: C. andamanensis AMV16, Cesiribacter andamanensis AMV16, Flexibacter sp. AMV16
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