STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpoE_3Sigma-24; Belongs to the sigma-70 factor family. ECF subfamily. (244 aa)    
Predicted Functional Partners:
EMR04074.1
Anti-sigma factor.
  
   0.795
sigV
RNA polymerase sigma factor sigV; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.764
rpoE_7
Sigma-24; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.748
gmk
Guanylate kinase.
  
    0.684
nadD
Putative nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
       0.680
sigM_2
RNA polymerase sigma factor sigM; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.623
EMR03808.1
Hypothetical protein.
   
   0.415
Your Current Organism:
Cesiribacter andamanensis
NCBI taxonomy Id: 1279009
Other names: C. andamanensis AMV16, Cesiribacter andamanensis AMV16, Flexibacter sp. AMV16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.