STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kfoC_1Chondroitin polymerase. (301 aa)    
Predicted Functional Partners:
wcaJ_4
Putative colanic biosynthesis UDP-glucose lipid carrier transferase.
 
 
 0.885
wcaJ_2
Putative colanic biosynthesis UDP-glucose lipid carrier transferase.
 
 
 0.880
icaA_3
Poly-beta-1,6-N-acetyl-D-glucosamine synthase.
  
     0.770
pgaC_2
Poly-beta-1,6-N-acetyl-D-glucosamine synthase.
  
     0.764
EMR03574.1
Colanic acid exporter.
  
    0.551
EMR02879.1
Hypothetical protein.
  
     0.506
EMR03573.1
Hypothetical protein.
       0.461
wcaJ_3
Putative colanic biosynthesis UDP-glucose lipid carrier transferase.
 
 
 0.450
wcaJ_1
Putative colanic biosynthesis UDP-glucose lipid carrier transferase.
 
 
 0.447
wcaJ_5
Putative colanic biosynthesis UDP-glucose lipid carrier transferase.
 
 
 0.426
Your Current Organism:
Cesiribacter andamanensis
NCBI taxonomy Id: 1279009
Other names: C. andamanensis AMV16, Cesiribacter andamanensis AMV16, Flexibacter sp. AMV16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.