STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EMR03172.1Hypothetical protein. (202 aa)    
Predicted Functional Partners:
EMR03173.1
Membrane-bound metallopeptidase.
       0.799
bcp_1
Putative peroxiredoxin bcp.
  
    0.791
tkt
Transketolase.
       0.759
EMR04210.1
Homogentisate 1,2-dioxygenase.
  
  
 0.738
EMR01114.1
Hypothetical protein.
  
 
  0.659
dxs_1
1-deoxy-D-xylulose-5-phosphate synthase.
       0.598
fumC
Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
   
 0.572
yggG_1
Putative metalloprotease yggG.
       0.563
frdA
Fumarate reductase flavoprotein subunit.
  
 
  0.551
serC_1
Putative phosphoserine aminotransferase.
  
 
  0.515
Your Current Organism:
Cesiribacter andamanensis
NCBI taxonomy Id: 1279009
Other names: C. andamanensis AMV16, Cesiribacter andamanensis AMV16, Flexibacter sp. AMV16
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