STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EMR03098.1Long-chain-fatty-acid--CoA ligase FadD15. (602 aa)    
Predicted Functional Partners:
pleC_5
Non-motile and phage-resistance protein.
  
 
  0.850
fadD_1
Long-chain-fatty-acid--CoA ligase.
  
 
0.848
rplE
50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.
    
 
 0.832
boxD
3,4-dehydroadipyl-CoA semialdehyde dehydrogenase.
  
 0.766
gmk
Guanylate kinase.
    
  0.765
rplR
Hypothetical protein; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
    
 
 0.733
arcB_3
Aerobic respiration control sensor protein ArcB.
    
  0.667
EMR02784.1
Long-chain-fatty-acid--CoA ligase FadD15.
  
  
 
0.664
EMR01801.1
Nitrate and nitrite sensing.
    
  0.659
luxQ_6
Autoinducer 2 sensor kinase/phosphatase luxQ.
    
  0.659
Your Current Organism:
Cesiribacter andamanensis
NCBI taxonomy Id: 1279009
Other names: C. andamanensis AMV16, Cesiribacter andamanensis AMV16, Flexibacter sp. AMV16
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