STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
puoPutrescine oxidase. (414 aa)    
Predicted Functional Partners:
hemE_1
Uroporphyrinogen decarboxylase; Overlaps CDS with the same product name; Belongs to the uroporphyrinogen decarboxylase family.
  
 
 0.904
hemE_2
Uroporphyrinogen decarboxylase; Overlaps CDS with the same product name; Belongs to the uroporphyrinogen decarboxylase family.
  
 
 0.904
hemH_1
Ferrochelatase; Overlaps CDS with the same product name; Belongs to the ferrochelatase family.
  
 
 0.875
hemH_2
Ferrochelatase; Overlaps CDS with the same product name; Belongs to the ferrochelatase family.
  
 
 0.875
EMR02896.1
DNA utilization protein GntX.
  
    0.765
hemF
Coproporphyrinogen-III oxidase, aerobic.
  
 
 0.647
EMR01780.1
Squalene synthase HpnD.
  
  
 0.629
EMR01270.1
Hypothetical protein.
 
     0.625
EMR02344.1
Mg-chelatase subunit ChlI.
   
 
 0.598
crtN_2
Dehydrosqualene desaturase.
  
 
 0.584
Your Current Organism:
Cesiribacter andamanensis
NCBI taxonomy Id: 1279009
Other names: C. andamanensis AMV16, Cesiribacter andamanensis AMV16, Flexibacter sp. AMV16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.