STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sigM_3RNA polymerase sigma factor sigM; Belongs to the sigma-70 factor family. ECF subfamily. (188 aa)    
Predicted Functional Partners:
EMR02405.1
Putative transmembrane transcriptional regulator (anti-sigma factor).
 
 
   0.930
EMR02404.1
Hypothetical protein.
 
     0.907
EMR02403.1
Hypothetical protein.
 
     0.903
sigM_2
RNA polymerase sigma factor sigM; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.798
rpoE_10
Sigma-24; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.773
rpoE_1
Sigma-24; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.772
rpoE_9
Sigma-24; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.772
rpoE_7
Sigma-24; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.771
rpoE_8
Sigma-24; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.769
rpoE_2
Sigma-24; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.768
Your Current Organism:
Cesiribacter andamanensis
NCBI taxonomy Id: 1279009
Other names: C. andamanensis AMV16, Cesiribacter andamanensis AMV16, Flexibacter sp. AMV16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.