STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydgJPutative oxidoreductase ydgJ. (386 aa)    
Predicted Functional Partners:
iolE
Inosose dehydratase.
 
 
 0.898
EMR02378.1
Hypothetical protein; Domain of Unknown Function (DUF1080).
 
     0.845
EMR02373.1
Gluconate 2-dehydrogenase flavoprotein precursor.
 
    0.784
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
  
 0.739
yqjI
6-phosphogluconate dehydrogenase, decarboxylating 2; Belongs to the 6-phosphogluconate dehydrogenase family.
 
 
 0.733
EMR02372.1
Hypothetical protein.
 
 
  0.711
EMR04753.1
Hypothetical protein.
  
 
 0.681
EMR00884.1
Gluconate 2-dehydrogenase flavoprotein precursor.
 
    0.678
hyi
Hydroxypyruvate isomerase.
 
    0.676
hmp
3-ketosteroid-9-alpha-hydroxylase reductase subunit.
    
  0.636
Your Current Organism:
Cesiribacter andamanensis
NCBI taxonomy Id: 1279009
Other names: C. andamanensis AMV16, Cesiribacter andamanensis AMV16, Flexibacter sp. AMV16
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