STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccaMultifunctional CCA protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (471 aa)    
Predicted Functional Partners:
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
   
 
 0.854
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
  
    0.842
EMR01666.1
Hypothetical protein.
     
 0.788
fkpA
Putative FKBP-type peptidyl-prolyl cis-trans isomerase fkpA precursor.
 
   0.740
EMR01738.1
Protein of unknown function (DUF2795).
  
     0.709
EMR01912.1
Hypothetical protein.
  
     0.654
EMR02986.1
Uncharacterized protein conserved in bacteria.
  
     0.641
EMR01291.1
DnaK suppressor protein.
 
     0.621
ribD
Riboflavin biosynthesis protein RibD.
  
    0.615
ftsI
Peptidoglycan synthase FtsI precursor.
 
   
 0.610
Your Current Organism:
Cesiribacter andamanensis
NCBI taxonomy Id: 1279009
Other names: C. andamanensis AMV16, Cesiribacter andamanensis AMV16, Flexibacter sp. AMV16
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