STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybhF_6Putative ABC transporter ATP-binding protein YbhF. (312 aa)    
Predicted Functional Partners:
EMR01177.1
ABC-type transport system involved in multi-copper enzyme maturation, permease component.
 
 
 0.958
tcyN
L-cystine import ATP-binding protein TcyN.
  
 
0.916
EMR03318.1
ABC-type transport system involved in multi-copper enzyme maturation, permease component.
 
 
 0.886
EMR02771.1
ABC-type transport system involved in multi-copper enzyme maturation, permease component.
 
 
 0.886
EMR03316.1
Hypothetical protein.
 
 
   0.794
EMR03317.1
ABC-type transport system involved in multi-copper enzyme maturation, permease component.
 
 
   0.794
atpD
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 
 0.561
atpA
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
    
   0.537
EMR04012.1
ABC-2 family transporter protein.
  
   0.502
EMR03558.1
ABC-type transport system involved in multi-copper enzyme maturation, permease component.
 
 
   0.484
Your Current Organism:
Cesiribacter andamanensis
NCBI taxonomy Id: 1279009
Other names: C. andamanensis AMV16, Cesiribacter andamanensis AMV16, Flexibacter sp. AMV16
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