STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000381965_02913Unannotated protein. (329 aa)    
Predicted Functional Partners:
GCA_000381965_02912
Unannotated protein.
  
  
 0.974
GCA_000381965_02620
Unannotated protein.
   
    0.836
GCA_000381965_03068
Unannotated protein.
   
    0.824
GCA_000381965_03066
Unannotated protein.
  
  
 0.814
GCA_000381965_03067
Unannotated protein.
   
    0.798
GCA_000381965_02284
Unannotated protein.
   
    0.724
GCA_000381965_02840
Unannotated protein.
   
    0.699
GCA_000381965_03088
Unannotated protein.
  
    0.698
GCA_000381965_03036
Unannotated protein.
   
    0.682
GCA_000381965_01190
Unannotated protein.
  
    0.679
Your Current Organism:
Oceanimonas smirnovii
NCBI taxonomy Id: 1279015
Other names: O. smirnovii ATCC BAA-899, Oceanimonas smirnovii ATCC BAA-899
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.