STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gmr1Cyclic di-GMP phosphodiesterase Gmr. (1549 aa)    
Predicted Functional Partners:
cph24
Phytochrome-like protein cph2.
 
0.991
gmr6
Cyclic di-GMP phosphodiesterase Gmr.
 
0.990
cph26
Phytochrome-like protein cph2.
 
0.990
cph28
Phytochrome-like protein cph2.
 
 
0.979
cph22
Phytochrome-like protein cph2.
 
 
0.976
pleD1
Response regulator PleD.
 
0.965
cph23
Phytochrome-like protein cph2.
 
0.965
gmr2
Cyclic di-GMP phosphodiesterase Gmr.
 
 
0.962
pleD2
Response regulator PleD.
 
0.947
AXFE_14310
Hypothetical protein.
 
 0.937
Your Current Organism:
Acidithrix ferrooxidans
NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.