STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylHXylose transport system permease protein XylH; Belongs to the binding-protein-dependent transport system permease family. (441 aa)    
Predicted Functional Partners:
mglA
Galactose/methyl galactoside import ATP-binding protein MglA.
 
 0.997
rbsB
D-ribose-binding periplasmic protein precursor.
 
 0.991
xylF
D-xylose-binding periplasmic protein precursor.
 
 0.982
rbsA
Ribose import ATP-binding protein RbsA.
 
 0.974
alsC
D-allose transport system permease protein AlsC; Belongs to the binding-protein-dependent transport system permease family.
 
  
 
0.842
ydjH
Putative sugar kinase YdjH.
  
     0.500
ccpA3
Catabolite control protein A.
  
     0.474
ccpA2
Catabolite control protein A.
  
     0.471
exuR
Putative HTH-type transcriptional repressor ExuR.
  
     0.470
iolX
Scyllo-inositol 2-dehydrogenase (NAD(+)).
     0.433
Your Current Organism:
Acidithrix ferrooxidans
NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3
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