Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AXFE_00680 | AXFE_00690 | AXFE_00680 | AXFE_00690 | Tetratricopeptide repeat protein. | Hypothetical protein. | 0.773 |
AXFE_00680 | AXFE_00700 | AXFE_00680 | AXFE_00700 | Tetratricopeptide repeat protein. | Hypothetical protein. | 0.773 |
AXFE_00680 | alaS1 | AXFE_00680 | AXFE_03370 | Tetratricopeptide repeat protein. | alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.930 |
AXFE_00680 | cph24 | AXFE_00680 | AXFE_29230 | Tetratricopeptide repeat protein. | Phytochrome-like protein cph2. | 0.875 |
AXFE_00680 | cph28 | AXFE_00680 | AXFE_34230 | Tetratricopeptide repeat protein. | Phytochrome-like protein cph2. | 0.766 |
AXFE_00680 | dnaK | AXFE_00680 | AXFE_11690 | Tetratricopeptide repeat protein. | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.916 |
AXFE_00680 | ribBA | AXFE_00680 | AXFE_25670 | Tetratricopeptide repeat protein. | Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.758 |
AXFE_00680 | rpoA | AXFE_00680 | AXFE_05090 | Tetratricopeptide repeat protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.856 |
AXFE_00680 | rpoB | AXFE_00680 | AXFE_05420 | Tetratricopeptide repeat protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.785 |
AXFE_00680 | rpoZ | AXFE_00680 | AXFE_23800 | Tetratricopeptide repeat protein. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.786 |
AXFE_00690 | AXFE_00680 | AXFE_00690 | AXFE_00680 | Hypothetical protein. | Tetratricopeptide repeat protein. | 0.773 |
AXFE_00690 | AXFE_00700 | AXFE_00690 | AXFE_00700 | Hypothetical protein. | Hypothetical protein. | 0.773 |
AXFE_00690 | alaS1 | AXFE_00690 | AXFE_03370 | Hypothetical protein. | alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.930 |
AXFE_00690 | cph24 | AXFE_00690 | AXFE_29230 | Hypothetical protein. | Phytochrome-like protein cph2. | 0.875 |
AXFE_00690 | cph28 | AXFE_00690 | AXFE_34230 | Hypothetical protein. | Phytochrome-like protein cph2. | 0.766 |
AXFE_00690 | dnaK | AXFE_00690 | AXFE_11690 | Hypothetical protein. | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.916 |
AXFE_00690 | ribBA | AXFE_00690 | AXFE_25670 | Hypothetical protein. | Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.758 |
AXFE_00690 | rpoA | AXFE_00690 | AXFE_05090 | Hypothetical protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.856 |
AXFE_00690 | rpoB | AXFE_00690 | AXFE_05420 | Hypothetical protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.785 |
AXFE_00690 | rpoZ | AXFE_00690 | AXFE_23800 | Hypothetical protein. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.786 |
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