Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| cph21 | cph23 | AXFE_13450 | AXFE_26840 | Phytochrome-like protein cph2. | Phytochrome-like protein cph2. | 0.930 |
| cph21 | cph27 | AXFE_13450 | AXFE_32930 | Phytochrome-like protein cph2. | Phytochrome-like protein cph2. | 0.851 |
| cph21 | nrgA1 | AXFE_13450 | AXFE_02440 | Phytochrome-like protein cph2. | Ammonium transporter NrgA. | 0.806 |
| cph23 | cph21 | AXFE_26840 | AXFE_13450 | Phytochrome-like protein cph2. | Phytochrome-like protein cph2. | 0.930 |
| cph23 | cph27 | AXFE_26840 | AXFE_32930 | Phytochrome-like protein cph2. | Phytochrome-like protein cph2. | 0.962 |
| cph23 | nrgA1 | AXFE_26840 | AXFE_02440 | Phytochrome-like protein cph2. | Ammonium transporter NrgA. | 0.703 |
| cph27 | cph21 | AXFE_32930 | AXFE_13450 | Phytochrome-like protein cph2. | Phytochrome-like protein cph2. | 0.851 |
| cph27 | cph23 | AXFE_32930 | AXFE_26840 | Phytochrome-like protein cph2. | Phytochrome-like protein cph2. | 0.962 |
| cph27 | nrgA1 | AXFE_32930 | AXFE_02440 | Phytochrome-like protein cph2. | Ammonium transporter NrgA. | 0.499 |
| glnB1 | glnD | AXFE_02430 | AXFE_02420 | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | Bifunctional uridylyltransferase/uridylyl-removing enzyme; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism. | 0.985 |
| glnB1 | gltB2 | AXFE_02430 | AXFE_29190 | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | Glutamate synthase [NADPH] large chain. | 0.795 |
| glnB1 | ipuC | AXFE_02430 | AXFE_20570 | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | Glutamate--isopropylamine ligase; Belongs to the glutamine synthetase family. | 0.455 |
| glnB1 | nadE1 | AXFE_02430 | AXFE_01960 | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | 0.672 |
| glnB1 | nrgA1 | AXFE_02430 | AXFE_02440 | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | Ammonium transporter NrgA. | 0.998 |
| glnB2 | glnD | AXFE_13350 | AXFE_02420 | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | Bifunctional uridylyltransferase/uridylyl-removing enzyme; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism. | 0.975 |
| glnB2 | gltB2 | AXFE_13350 | AXFE_29190 | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | Glutamate synthase [NADPH] large chain. | 0.795 |
| glnB2 | ipuC | AXFE_13350 | AXFE_20570 | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | Glutamate--isopropylamine ligase; Belongs to the glutamine synthetase family. | 0.455 |
| glnB2 | nadE1 | AXFE_13350 | AXFE_01960 | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | 0.672 |
| glnB2 | nrgA1 | AXFE_13350 | AXFE_02440 | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | Ammonium transporter NrgA. | 0.977 |
| glnD | glnB1 | AXFE_02420 | AXFE_02430 | Bifunctional uridylyltransferase/uridylyl-removing enzyme; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism. | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | 0.985 |
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