Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AXFE_20450 | rpoE | AXFE_20450 | AXFE_24560 | Hypothetical protein. | ECF RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily. | 0.617 |
AXFE_20450 | sigE | AXFE_20450 | AXFE_05500 | Hypothetical protein. | ECF RNA polymerase sigma factor SigE; Belongs to the sigma-70 factor family. ECF subfamily. | 0.617 |
AXFE_20450 | sigL | AXFE_20450 | AXFE_10990 | Hypothetical protein. | ECF RNA polymerase sigma factor SigL; Belongs to the sigma-70 factor family. ECF subfamily. | 0.617 |
cheR2 | prkC | AXFE_12330 | AXFE_06800 | Chemotaxis protein methyltransferase cher2. | Serine/threonine-protein kinase PrkC. | 0.467 |
cheR2 | rpoE | AXFE_12330 | AXFE_24560 | Chemotaxis protein methyltransferase cher2. | ECF RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily. | 0.706 |
cheR2 | sigE | AXFE_12330 | AXFE_05500 | Chemotaxis protein methyltransferase cher2. | ECF RNA polymerase sigma factor SigE; Belongs to the sigma-70 factor family. ECF subfamily. | 0.706 |
cheR2 | sigL | AXFE_12330 | AXFE_10990 | Chemotaxis protein methyltransferase cher2. | ECF RNA polymerase sigma factor SigL; Belongs to the sigma-70 factor family. ECF subfamily. | 0.706 |
prkC | cheR2 | AXFE_06800 | AXFE_12330 | Serine/threonine-protein kinase PrkC. | Chemotaxis protein methyltransferase cher2. | 0.467 |
prkC | rpoE | AXFE_06800 | AXFE_24560 | Serine/threonine-protein kinase PrkC. | ECF RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily. | 0.526 |
prkC | rpoZ | AXFE_06800 | AXFE_23800 | Serine/threonine-protein kinase PrkC. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.419 |
prkC | rsrA | AXFE_06800 | AXFE_10600 | Serine/threonine-protein kinase PrkC. | Anti-sigma factor RsrA. | 0.586 |
prkC | sigE | AXFE_06800 | AXFE_05500 | Serine/threonine-protein kinase PrkC. | ECF RNA polymerase sigma factor SigE; Belongs to the sigma-70 factor family. ECF subfamily. | 0.526 |
prkC | sigL | AXFE_06800 | AXFE_10990 | Serine/threonine-protein kinase PrkC. | ECF RNA polymerase sigma factor SigL; Belongs to the sigma-70 factor family. ECF subfamily. | 0.526 |
rpoA | rpoB | AXFE_05090 | AXFE_05420 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
rpoA | rpoC | AXFE_05090 | AXFE_05410 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
rpoA | rpoE | AXFE_05090 | AXFE_24560 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | ECF RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily. | 0.655 |
rpoA | rpoZ | AXFE_05090 | AXFE_23800 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.999 |
rpoA | sigE | AXFE_05090 | AXFE_05500 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | ECF RNA polymerase sigma factor SigE; Belongs to the sigma-70 factor family. ECF subfamily. | 0.655 |
rpoA | sigL | AXFE_05090 | AXFE_10990 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | ECF RNA polymerase sigma factor SigL; Belongs to the sigma-70 factor family. ECF subfamily. | 0.862 |
rpoB | rpoA | AXFE_05420 | AXFE_05090 | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
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