Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AXFE_01600 | nrdJ1 | AXFE_01600 | AXFE_06020 | Pyridoxamine 5'-phosphate oxidase. | Vitamin B12-dependent ribonucleotide reductase. | 0.597 |
AXFE_15110 | nrdJ1 | AXFE_15110 | AXFE_06020 | Glutaredoxin. | Vitamin B12-dependent ribonucleotide reductase. | 0.825 |
AXFE_15110 | nrdJ2 | AXFE_15110 | AXFE_06030 | Glutaredoxin. | Vitamin B12-dependent ribonucleotide reductase. | 0.829 |
AXFE_15110 | ribBA | AXFE_15110 | AXFE_25670 | Glutaredoxin. | Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.778 |
AXFE_27910 | nrdJ1 | AXFE_27910 | AXFE_06020 | RDD family protein. | Vitamin B12-dependent ribonucleotide reductase. | 0.681 |
AXFE_27910 | ribBA | AXFE_27910 | AXFE_25670 | RDD family protein. | Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.422 |
AXFE_31150 | nrdJ1 | AXFE_31150 | AXFE_06020 | Putative glutaredoxin.1. | Vitamin B12-dependent ribonucleotide reductase. | 0.825 |
AXFE_31150 | nrdJ2 | AXFE_31150 | AXFE_06030 | Putative glutaredoxin.1. | Vitamin B12-dependent ribonucleotide reductase. | 0.829 |
AXFE_31150 | ribBA | AXFE_31150 | AXFE_25670 | Putative glutaredoxin.1. | Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.778 |
desA1 | dut | AXFE_33380 | AXFE_22600 | Putative acyl-[acyl-carrier-protein] desaturase DesA1. | Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA. | 0.437 |
desA1 | nrdJ1 | AXFE_33380 | AXFE_06020 | Putative acyl-[acyl-carrier-protein] desaturase DesA1. | Vitamin B12-dependent ribonucleotide reductase. | 0.943 |
desA1 | nrdJ2 | AXFE_33380 | AXFE_06030 | Putative acyl-[acyl-carrier-protein] desaturase DesA1. | Vitamin B12-dependent ribonucleotide reductase. | 0.992 |
desA1 | ribBA | AXFE_33380 | AXFE_25670 | Putative acyl-[acyl-carrier-protein] desaturase DesA1. | Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.465 |
dnaN | dut | AXFE_19840 | AXFE_22600 | DNA polymerase III subunit beta. | Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA. | 0.839 |
dnaN | nrdJ1 | AXFE_19840 | AXFE_06020 | DNA polymerase III subunit beta. | Vitamin B12-dependent ribonucleotide reductase. | 0.576 |
dnaN | nrdJ2 | AXFE_19840 | AXFE_06030 | DNA polymerase III subunit beta. | Vitamin B12-dependent ribonucleotide reductase. | 0.805 |
dnaN | polA | AXFE_19840 | AXFE_20870 | DNA polymerase III subunit beta. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.999 |
dut | desA1 | AXFE_22600 | AXFE_33380 | Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA. | Putative acyl-[acyl-carrier-protein] desaturase DesA1. | 0.437 |
dut | dnaN | AXFE_22600 | AXFE_19840 | Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA. | DNA polymerase III subunit beta. | 0.839 |
dut | nrdJ1 | AXFE_22600 | AXFE_06020 | Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA. | Vitamin B12-dependent ribonucleotide reductase. | 0.612 |
page 1 of 3