STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfdCInner membrane protein YfdC. (292 aa)    
Predicted Functional Partners:
mtcA11
Beta-carbonic anhydrase 1.
  
    0.644
mtcA12
Beta-carbonic anhydrase 1.
  
    0.644
mtcA13
Beta-carbonic anhydrase 1.
  
    0.644
nasF
uroporphyrinogen-III C-methyltransferase; Belongs to the precorrin methyltransferase family.
  
  
 0.620
hycE1
Formate hydrogenlyase subunit 5 precursor.
     
 0.585
hycE2
Formate hydrogenlyase subunit 5 precursor.
     
 0.585
gltB2
Glutamate synthase [NADPH] large chain.
   
  
 0.577
petC1
Cytochrome b6-f complex iron-sulfur subunit 1.
  
  
 0.560
cysG2
Siroheme synthase.
  
  
 0.541
pheT
phenylalanine--tRNA ligase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
     
 0.534
Your Current Organism:
Acidithrix ferrooxidans
NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3
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