STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AXFE_06330Transposase. (185 aa)    
Predicted Functional Partners:
AXFE_16790
Hypothetical protein.
 
     0.805
AXFE_27350
Hypothetical protein.
 
     0.798
AXFE_29120
Hypothetical protein.
 
     0.780
AXFE_15040
Transposase.
  
     0.714
AXFE_01540
Transposase.
  
     0.711
AXFE_16850
Transposase.
  
     0.605
AXFE_33490
Hypothetical protein.
  
     0.556
traI
Multifunctional conjugation protein TraI.
  
     0.458
AXFE_33470
TraM recognition site of TraD and TraG.
  
     0.421
AXFE_16970
Hypothetical protein.
  
     0.412
Your Current Organism:
Acidithrix ferrooxidans
NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3
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