STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AXFE_06560Hypothetical protein. (417 aa)    
Predicted Functional Partners:
AXFE_06570
AIR carboxylase.
 
  
 0.980
nadE2
NH(3)-dependent NAD(+) synthetase.
  
 0.970
AXFE_32670
Hypothetical protein.
 
  
 0.753
gpr1
L-glyceraldehyde 3-phosphate reductase.
       0.635
AXFE_20140
Hypothetical protein.
 
  
 0.625
pyrG
CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.
 
      0.557
pncC
Nicotinamide-nucleotide amidohydrolase PncC; Belongs to the CinA family.
       0.518
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
       0.508
fdh
D-threo-aldose 1-dehydrogenase.
 
    0.492
Your Current Organism:
Acidithrix ferrooxidans
NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3
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