STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pctB1Methyl-accepting chemotaxis protein PctB. (114 aa)    
Predicted Functional Partners:
gmr2
Cyclic di-GMP phosphodiesterase Gmr.
  
 0.873
cph22
Phytochrome-like protein cph2.
  
 0.866
cheA
Chemotaxis protein CheA.
  
 0.831
cheW
Chemotaxis protein CheW.
  
 0.828
AXFE_29780
Methyl-accepting protein IV.
  
 
 0.764
cph24
Phytochrome-like protein cph2.
  
 0.738
cph28
Phytochrome-like protein cph2.
  
 0.737
gmr6
Cyclic di-GMP phosphodiesterase Gmr.
  
 0.724
cph26
Phytochrome-like protein cph2.
  
 0.724
cph21
Phytochrome-like protein cph2.
  
 0.705
Your Current Organism:
Acidithrix ferrooxidans
NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.