STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mmgC2acyl-CoA dehydrogenase. (400 aa)    
Predicted Functional Partners:
acrB
acryloyl-CoA reductase electron transfer subunit gamma.
 
 0.992
etfA2
Electron transfer flavoprotein subunit alpha.
 
  0.954
AXFE_30640
Phosphotransferase enzyme family protein.
 
 
  0.881
etfB
Electron transfer flavoprotein subunit beta.
 
   0.865
etfA1
Electron transfer flavoprotein subunit alpha.
  
  0.864
acdA3
acyl-CoA dehydrogenase.
  
  
 
0.797
scpA5
methylmalonyl-CoA mutase.
  
 
 0.792
kgd
Multifunctional 2-oxoglutarate metabolism enzyme.
  
 0.788
rmlA
Glucose-1-phosphate thymidylyltransferase.
       0.770
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
   
  0.768
Your Current Organism:
Acidithrix ferrooxidans
NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3
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