STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cbxSCRibulose bisphosphate carboxylase small chain, chromosomal. (145 aa)    
Predicted Functional Partners:
cbbL
Ribulose bisphosphate carboxylase large chain; Belongs to the RuBisCO large chain family.
 
 0.999
prk
Phosphoribulokinase.
 
  
 0.934
spoVK
Stage V sporulation protein K.
 
  
 0.911
pgk
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
 0.893
caiE
Carnitine operon protein CaiE.
    
 
 0.863
mtcA11
Beta-carbonic anhydrase 1.
    
 0.836
mtcA12
Beta-carbonic anhydrase 1.
    
 0.836
mtcA13
Beta-carbonic anhydrase 1.
    
 0.836
gph1
Phosphoglycolate phosphatase.
    
 0.771
gph2
Phosphoglycolate phosphatase.
    
 0.771
Your Current Organism:
Acidithrix ferrooxidans
NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.