Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AXFE_07900 | AXFE_34730 | AXFE_07900 | AXFE_34730 | Hypothetical protein. | AP-4-A phosphorylase. | 0.597 |
AXFE_07900 | hrdB | AXFE_07900 | AXFE_01950 | Hypothetical protein. | RNA polymerase principal sigma factor HrdB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.806 |
AXFE_07900 | pafA | AXFE_07900 | AXFE_10500 | Hypothetical protein. | Pup--protein ligase; Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side- chain amino group of a substrate lysine. | 0.670 |
AXFE_07900 | polC3 | AXFE_07900 | AXFE_19530 | Hypothetical protein. | DNA polymerase III PolC-type. | 0.772 |
AXFE_07900 | prcA2 | AXFE_07900 | AXFE_10510 | Hypothetical protein. | Proteasome subunit alpha 2; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. | 0.638 |
AXFE_07900 | rpoA | AXFE_07900 | AXFE_05090 | Hypothetical protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.856 |
AXFE_07900 | rpoB | AXFE_07900 | AXFE_05420 | Hypothetical protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.859 |
AXFE_07900 | rpoC | AXFE_07900 | AXFE_05410 | Hypothetical protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.856 |
AXFE_07900 | rpoZ | AXFE_07900 | AXFE_23800 | Hypothetical protein. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.875 |
AXFE_07900 | sigA2 | AXFE_07900 | AXFE_26800 | Hypothetical protein. | RNA polymerase sigma factor SigA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.806 |
AXFE_34730 | AXFE_07900 | AXFE_34730 | AXFE_07900 | AP-4-A phosphorylase. | Hypothetical protein. | 0.597 |
AXFE_34730 | polC3 | AXFE_34730 | AXFE_19530 | AP-4-A phosphorylase. | DNA polymerase III PolC-type. | 0.815 |
AXFE_34730 | rpoA | AXFE_34730 | AXFE_05090 | AP-4-A phosphorylase. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.979 |
AXFE_34730 | rpoB | AXFE_34730 | AXFE_05420 | AP-4-A phosphorylase. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.986 |
AXFE_34730 | rpoC | AXFE_34730 | AXFE_05410 | AP-4-A phosphorylase. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.937 |
AXFE_34730 | rpoZ | AXFE_34730 | AXFE_23800 | AP-4-A phosphorylase. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.977 |
hrdB | AXFE_07900 | AXFE_01950 | AXFE_07900 | RNA polymerase principal sigma factor HrdB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Hypothetical protein. | 0.806 |
hrdB | polC3 | AXFE_01950 | AXFE_19530 | RNA polymerase principal sigma factor HrdB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA polymerase III PolC-type. | 0.772 |
hrdB | rpoA | AXFE_01950 | AXFE_05090 | RNA polymerase principal sigma factor HrdB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.986 |
hrdB | rpoB | AXFE_01950 | AXFE_05420 | RNA polymerase principal sigma factor HrdB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.987 |
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