STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
coxLCarbon monoxide dehydrogenase large chain. (785 aa)    
Predicted Functional Partners:
cutS
Carbon monoxide dehydrogenase small chain.
 0.997
coxS
Carbon monoxide dehydrogenase small chain.
 0.996
cutM
Carbon monoxide dehydrogenase medium chain.
 0.965
coxM
Carbon monoxide dehydrogenase medium chain.
 0.964
pucA1
Putative xanthine dehydrogenase subunit A.
 
 
  0.839
pucA2
Putative xanthine dehydrogenase subunit A.
 
 
  0.814
AXFE_14040
Carbon monoxide dehydrogenase subunit G (CoxG).
 
 0.799
AXFE_08020
Hypothetical protein.
 
 
  0.775
gltD
Glutamate synthase [NADPH] small chain.
  
 
  0.762
AXFE_14070
VWA domain containing CoxE-like protein.
 
     0.680
Your Current Organism:
Acidithrix ferrooxidans
NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.