Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AXFE_08090 | ald1 | AXFE_08090 | AXFE_08030 | Carboxynorspermidine synthase. | Alanine dehydrogenase. | 0.628 |
AXFE_08090 | dapF | AXFE_08090 | AXFE_00470 | Carboxynorspermidine synthase. | Diaminopimelate epimerase; Belongs to the diaminopimelate epimerase family. | 0.597 |
AXFE_08090 | folE | AXFE_08090 | AXFE_10650 | Carboxynorspermidine synthase. | GTP cyclohydrolase 1. | 0.489 |
AXFE_08090 | gbuA | AXFE_08090 | AXFE_04730 | Carboxynorspermidine synthase. | Guanidinobutyrase; Belongs to the arginase family. | 0.694 |
AXFE_08090 | lrp | AXFE_08090 | AXFE_08100 | Carboxynorspermidine synthase. | Leucine-responsive regulatory protein. | 0.505 |
AXFE_08090 | lysA | AXFE_08090 | AXFE_11260 | Carboxynorspermidine synthase. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.829 |
AXFE_08090 | nadE1 | AXFE_08090 | AXFE_01960 | Carboxynorspermidine synthase. | Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | 0.645 |
AXFE_08090 | prr | AXFE_08090 | AXFE_08080 | Carboxynorspermidine synthase. | Gamma-aminobutyraldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 0.631 |
AXFE_08090 | ribD | AXFE_08090 | AXFE_25650 | Carboxynorspermidine synthase. | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.468 |
AXFE_08090 | tpa | AXFE_08090 | AXFE_08110 | Carboxynorspermidine synthase. | Taurine--pyruvate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.502 |
ald1 | AXFE_08090 | AXFE_08030 | AXFE_08090 | Alanine dehydrogenase. | Carboxynorspermidine synthase. | 0.628 |
ald1 | lysA | AXFE_08030 | AXFE_11260 | Alanine dehydrogenase. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.607 |
ald1 | nadE1 | AXFE_08030 | AXFE_01960 | Alanine dehydrogenase. | Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | 0.880 |
dapF | AXFE_08090 | AXFE_00470 | AXFE_08090 | Diaminopimelate epimerase; Belongs to the diaminopimelate epimerase family. | Carboxynorspermidine synthase. | 0.597 |
dapF | lysA | AXFE_00470 | AXFE_11260 | Diaminopimelate epimerase; Belongs to the diaminopimelate epimerase family. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.980 |
dapF | ribD | AXFE_00470 | AXFE_25650 | Diaminopimelate epimerase; Belongs to the diaminopimelate epimerase family. | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.634 |
folE | AXFE_08090 | AXFE_10650 | AXFE_08090 | GTP cyclohydrolase 1. | Carboxynorspermidine synthase. | 0.489 |
folE | nadE1 | AXFE_10650 | AXFE_01960 | GTP cyclohydrolase 1. | Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | 0.611 |
folE | ribD | AXFE_10650 | AXFE_25650 | GTP cyclohydrolase 1. | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.903 |
gbuA | AXFE_08090 | AXFE_04730 | AXFE_08090 | Guanidinobutyrase; Belongs to the arginase family. | Carboxynorspermidine synthase. | 0.694 |
page 1 of 3