STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AXFE_08540Hypothetical protein. (666 aa)    
Predicted Functional Partners:
bchI1
Magnesium-chelatase 38 kDa subunit.
    0.982
AXFE_16570
Phosphatidylinositol 3- and 4-kinase.
 
     0.709
AXFE_31750
DSBA-like thioredoxin domain protein.
  
     0.578
AXFE_22350
Hypothetical protein.
  
     0.536
AXFE_01580
DSBA-like thioredoxin domain protein.
  
     0.525
AXFE_14130
Hypothetical protein.
    
   0.513
mtnN
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase.
    
   0.513
AXFE_02520
DSBA-like thioredoxin domain protein.
  
     0.476
whiB
Transcriptional regulator WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
       0.472
AXFE_12030
Hypothetical protein.
  
     0.440
Your Current Organism:
Acidithrix ferrooxidans
NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.