STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AXFE_09230Putative type I restriction enzymeP M protein. (528 aa)    
Predicted Functional Partners:
AXFE_09220
Putative type-1 restriction enzyme specificity protein MG438.
 
 0.996
hsdR1
Type-1 restriction enzyme R protein; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
 
 0.989
AXFE_24860
EcoKI restriction-modification system protein HsdS.
 
 0.988
hsdR2
Type-1 restriction enzyme R protein; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
 
 0.956
AXFE_24780
Hypothetical protein.
 
 
 0.955
AXFE_09200
Chromosome segregation protein.
  
  
 0.843
AXFE_09180
Hypothetical protein; RecF/RecN/SMC N terminal domain.
       0.776
AXFE_09190
Hypothetical protein.
       0.773
AXFE_09170
Hypothetical protein.
       0.639
AXFE_34730
AP-4-A phosphorylase.
  
 
 0.617
Your Current Organism:
Acidithrix ferrooxidans
NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.