STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AXFE_09880NADP oxidoreductase coenzyme F420-dependent. (221 aa)    
Predicted Functional Partners:
mshC
L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase.
       0.835
fbiB1
Coenzyme F420:L-glutamate ligase.
 
     0.772
cofD
2-phospho-L-lactate transferase.
 
     0.767
mqnC
Cyclic dehypoxanthine futalosine synthase.
 
     0.720
fgd2
F420-dependent glucose-6-phosphate dehydrogenase.
 
    0.638
AXFE_09480
Pyridoxamine 5'-phosphate oxidase.
  
     0.627
cofC
2-phospho-L-lactate guanylyltransferase.
 
     0.623
inhA
Enoyl-[acyl-carrier-protein] reductase; NADH.
       0.604
AXFE_09850
AP-4-A phosphorylase.
       0.585
thrS
threonine--tRNA ligase; Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.585
Your Current Organism:
Acidithrix ferrooxidans
NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3
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